The integron database
WebJan 27, 2011 · uploaded into the integron database: Annotation. of Cassette and Integron Data (ACID) (Joss et al., 2009). ACID contains publicly available integron. sequences and users can annotate integron-related. WebFeb 26, 2024 · In summary, integrons accelerate resistance evolution by rapidly generating combinatorial variation in cassette composition while maintaining genomic integrity. eLife digest From urinary tract infections to bacterial pneumonia, many diseases can now be treated through a course of antibiotics.
The integron database
Did you know?
WebApr 21, 2009 · This database will help create more accurate annotations of bacterial genomes and facilitate a more representative sample of integron frequency and diversity. … WebJul 23, 2024 · For the detection of integrons, we used Integron_Finder to predict possible integrons and used the BLASTN program comparing the integron sequence with …
http://integrall.bio.ua.pt/?nomenclature WebApr 15, 2009 · INTEGRALL is a freely available, text-based search system developed with the aim of collecting and organizing information on integrons in a single database. The …
WebINTEGRALL provides a public genetic repository for sequence data and nomenclature and offers to scientists an easy and interactive access to integron's DNA sequences, their … WebMar 1, 2009 · Abstract. INTEGRALL is a freely available, text-based search system developed with the aim of collecting and organizing information on integrons in a single database. …
WebJul 20, 2024 · The integron database INTEGRALL contains, for example, roughly 1500 integrase and 8000 gene cassettes extracted from public sequence repositories [ 16 ]. …
WebOct 14, 2024 · Integrons are genetic platforms for captured gene cassettes, which are regarded as adaptation and evolution of bacteria ( José, 2024 ). They have traditional genetic structure of two conserved segments (5'-CS and 3'-CS) and a variable region ( Barraud and Ploy, 2015 ). mysql extra using index condition using whereWebA screening technique for integrons in members of the family Enterobacteriaceae and nonfermenting gram-negative bacteria by real-time PCR is reported. A total of 226 isolates of gram-negative bacteria obtained from a variety of clinical specimens were screened for class 1 integrons by real-time PCR performed on a LightCycler instrument. the spine orthopedic and pain centerWebThe Integron Database: HOME INTRO LIST SEARCH/BLAST NOMENCLATURE GLOSSARY LINKS CONTACTS ABOUT: Nomenclature of Gene Cassettes. To avoid incorrect naming and the attribution of different names to identical gene cassettes, INTEGRALL suggests the following nomenclature scheme. mysql extract yearWebNov 10, 2024 · The integron is a bacterial recombination system that allows acquisition, stockpiling and expression of promoterless genes embedded in cassettes. Some integrons, like the one found in the second chromosome of Vibrio cholerae, can be particularly massive, gathering hundreds of non-expressed cassettes. the spine portalhttp://integrall.bio.ua.pt/?intro the spine picturesWebIn plasmid pZDHY95-VIM-2, bla VIM-2 is integrated into the class I integron In1722, designated by the INTEGRALL database, and the gene cassette array was 5ʹCS-aacA4ʹ-30-bla VIM-2-aacA4ʹ-3ʹCS. Unlike the typical class I integron, the 3ʹCS of In1722 was replaced by tniC/R, a functional transposon in Tn402 (Tn5090), instead of the qacEΔ1/sul1. mysql extra using temporaryWebMay 13, 2024 · Integrons are conserved, transposon-like DNA elements that mostly encode antibiotic resistance determinants and have a high ability for chromosomal integration in bacteria. 3 To date, several classes of integrons have been described; among them, class 1 and 2 integrons are frequently reported from MDR A. baumannii strains. 4, 5 mysql extra using filesort